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Nov 10, 2010 Of late, some of the best technology to come out of MIT's celebrated Media Lab has been built with whippersnappers in mind. The birthplace of the $100 laptop has also issued forth Scratch, a.
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TScratch download |
TScratch is a software tool developed to automatically analyze wound healing |
assays (scratch assays). It is available as a stand-alone application using |
Matlab Compiler on Macintosh (Intel) OS X and PC (Windows) platforms. The |
downloadable files below are available in two forms, one including the Matlab |
Compiler Runtime (MCR) v7.8 engine, and one without it. If MCR 7.8 is not |
installed on your computer, you will need the form including MCR. If you |
already have MCR 7.8 installed (for example if you have MATLAB R2008a with |
Matlab Compiler; you can check which version of MCR you have by writing |
'mcrversion' at the MATLAB prompt), you can download the smaller file. |
The manual with installation instructions is included in the zip-files |
(TScratch_manual.pdf), but is also available here: |
http://www.cse-lab.ethz.ch/wp-content/uploads/2017/12/tscratch_manual.pdf. |
Some troubleshooting hints are provided below. |
The following TScratch packages are available at our repository. |
Macintosh (Intel) |
Please download the proper file and extract it using Archive Utility |
(tscratch_nomcr_pkg.zip - a version which requires the user to have Matlab |
Compiler Runtime (MCR) v7.8 installed (3 MB), tscratch_pkg_simple.zip - a |
stand-alone application, includes MCR (206 MB)). The second file can be downloaded |
from here: http://www.cse-lab.ethz.ch/wp-content/uploads/2017/12/tscratch_pkg_simple.zip. |
Open TScratch_manual.pdf and read further installation instructions there. The installation procedure was |
developed by Will Ashby, Vanderbilt University. |
According to the Installation Instructions included in the second file (tscrach_pkg_simple.zip), |
the Matlab runtime (v78) must be installed first and then TScratch must be copied into the Application folder. |
The older version of the Matlab runtime does not interfere with the existing Matlab installation. |
Moreover, you must have XQuartz installed (https://www.xquartz.org/). |
TScratch might fail to start (e.g. macOS Sierra) due to a missing function in libz.1.dylib. |
In that case delete that file from the /Applications/MATLAB/MATLAB_Compiler_Runtime/v78/bin/maci folder. |
Windows |
Please download the proper file and extract it (tscratch_nomcr_win.zip - a |
version which requires the user to have Matlab Compiler Runtime (MCR) v7.8 |
installed (3 MB), tscratch_win.zip - a stand-alone application, includes MCR |
(231 MB)). The second file can be downloaded from here: |
http://www.cse-lab.ethz.ch/wp-content/uploads/2017/12/tscratch_win.zip. |
Then double-click on TScratch_win.exe to unpack the program and |
install MCR (if the version with MCR was downloaded). Then run TScratch.exe to |
start the program. To the best of our knowledge the software works in Windows |
XP, Vista and Windows 7. It was not tested on Windows 8, but might work there |
too. We advise that you download and install the version with MCR in any case, |
since it will be incompatible to more recent Matlab versions. In short you |
should download the the Windows version with MCR, unzip it and execute the |
resulting 'TScratch_win' executable. This will only install MCR and should run |
without errors. You can then execute the 'TScratch' executable. |
Troubleshooting |
We have observed that on some machines depending on what is already |
installed, some libraries are not automatically installed. In such cases |
TScratch may fail to open without showing any errors. If this happens try |
the following: Find where MCR was installed (by default this is in |
'C:Program Files (x86)MATLABMATLAB Compiler Runtimev78') Within that |
folder, you can find 'vcredist_x86.exe' in the folder 'binwin32'. Run this |
to install the missing libraries. |
Source Code |
You can also download the source code of TScratch (TScratch_src.zip). You will |
need Matlab (R2008a or newer) and the CurveLab library (available at |
www.curvelet.org) to run it. Please consult the README file included in the |
source code package for further instructions. |
Sample data set |
This zip-file contains a sample data set from a wound-healing experiment: |
[tscratch_sampledata.zip](http://www.cse-lab.ethz.ch/wp-content/uploads/2017/12/tscratch_sampledata.zip) (5 MB). |
Download and unpack it to try out the TScratch program on some real data. |
Authors |
TScratch was developed by Tobias Gebäck and Martin Schulz, ETH Zürich. The |
Software is provided as-is, but very limited support might be provided by the |
current members of the CSE lab (www.cse-lab.ethz.ch). |
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This download is virus-free.This file was last analysed by Free Download Manager Lib 130 days ago.
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